#Synteny
#Annotations
#Breakpoints
#Visualization
#Chromosomes

CHITRA

CHROMOSOME INTERACTIVE TOOL FOR REARRANGEMENT ANALYSIS

An advanced visualization tool for studying chromosomal rearrangements through interactive synteny block analysis and chromosome breakpoint mapping.

WORKFLOW & FEATURES

Input Requirements

Required Files (CSV)

  • Synteny data with pairwise synteny blocks
  • Species data with genome information
  • Reference chromosome size data

Optional Files

  • Gene annotations
  • Breakpoint data

Visualization Options

Linear View

  • Interactive ribbons
  • Customizable colors
  • Strand filtering
  • Breakpoint mapping

Chord Map

  • Circular visualization
  • Detailed block info
  • Gene annotations
  • Interactive filtering
DocumentationSource Code
FAQ
Common Questions about CHITRA

CHITRA (Chromosome Interactive Tool for Rearrangement Analysis) is an advanced bioinformatics tool for studying chromosomal rearrangements through interactive visualizations of synteny blocks and chromosome breakpoints.